If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ), 'gf_id' => 'HOM05D000945', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000945' ), 'data_identifier' => 'HOM05D000945', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000945', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '634', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10270' => 'bna', 'A01p39290' => 'bna', 'A01p39300' => 'bna', 'A01p39530' => 'bna', 'A03p38630' => 'bna', 'A03p38820' => 'bna', 'A03p51220' => 'bna', 'A03p62280' => 'bna', 'A05p34960' => 'bna', 'A05p34970' => 'bna', 'A05p35320' => 'bna', 'A07p43640' => 'bna', 'A08p20600' => 'bna', 'Aa31LG10G1330' => 'aar', 'Aa31LG10G1610' => 'aar', 'Aa31LG6G1060' => 'aar', 'Aa31LG8G1360' => 'aar', 'Aa31LG8G1380' => 'aar', 'Aa31LG8G1700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2915' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3953' => 'aag', 'Actinidia01562' => 'ach', 'Actinidia04595' => 'ach', 'Actinidia09015' => 'ach', 'Actinidia10018' => 'ach', 'Actinidia10831' => 'ach', 'Actinidia18836' => 'ach', 'Actinidia20599' => 'ach', 'Actinidia24451' => 'ach', 'Actinidia25340' => 'ach', 'Actinidia31564' => 'ach', 'Actinidia32209' => 'ach', 'Actinidia32210' => 'ach', 'Actinidia35048' => 'ach', 'Ah.04g163780' => 'amhyb', 'Ah.06g187450' => 'amhyb', 'Ah.14g086400' => 'amhyb', 'Ah.15g095120' => 'amhyb', 'AL2G38750' => 'aly', 'AL3G26360' => 'aly', 'AL3G26380' => 'aly', 'AL3G26790' => 'aly', 'AL3G26800' => 'aly', 'AL60U10060' => 'aly', 'AL7G36030' => 'aly', 'Aqoxy1G01684' => 'aox', 'Aqoxy1G02000' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3UI9Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Z6Y8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.64FYBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7QAB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P77KQN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHM6UX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD813B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMGP34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X06K7E' => 'arhy', 'AT3G14130' => 'ath', 'AT3G14150' => 'ath', 'AT3G14415' => 'ath', 'AT3G14420' => 'ath', 'AT4G18360' => 'ath', 'ATR0681G019' => 'atr', 'ATR1098G101' => 'atr', 'Atru.chr1.4092' => 'acertr', 'Atru.chr1.4093' => 'acertr', 'Atru.chr1.4094' => 'acertr', 'Atru.chr10.1183' => 'acertr', 'Atru.chr10.1186' => 'acertr', 'Atru.chr2.434_Atru.chr2.435' => 'acertr', 'Atru.chr2.436' => 'acertr', 'AUR62001441' => 'cqu', 'AUR62002720' => 'cqu', 'AUR62002721' => 'cqu', 'AUR62009924' => 'cqu', 'AUR62030178' => 'cqu', 'AUR62030179' => 'cqu', 'AUR62037647' => 'cqu', 'AUR62037949' => 'cqu', 'AUR62041785' => 'cqu', 'BcaB01g01801' => 'bca', 'BcaB03g16012' => 'bca', 'BcaB04g18819' => 'bca', 'BcaB04g18820' => 'bca', 'BcaB04g18844' => 'bca', 'BcaB04g18845' => 'bca', 'BcaB06g25386' => 'bca', 'BcaC01g03932' => 'bca', 'BcaC01g03933' => 'bca', 'BcaC01g03957' => 'bca', 'BcaC05g25311' => 'bca', 'BcaC05g29085' => 'bca', 'BcaC06g30592' => 'bca', 'BcaC08g47412' => 'bca', 'BcaC09g48408' => 'bca', 'BcaC09g48409' => 'bca', 'BcaC09g51530' => 'bca', 'BcaNung02698' => 'bca', 'BolC1t01198H' => 'bol', 'BolC1t04963H' => 'bol', 'BolC1t04999H' => 'bol', 'BolC2t10452H' => 'bol', 'BolC3t14426H' => 'bol', 'BolC3t16939H' => 'bol', 'BolC3t16961H' => 'bol', 'BolC3t16962H' => 'bol', 'BolC5t33968H' => 'bol', 'BolC5t33969H' => 'bol', 'BolC5t34027H' => 'bol', 'BolC5t34028H' => 'bol', 'BolC7t45466H' => 'bol', 'BraA01t00974Z' => 'bra', 'BraA01t03972Z' => 'bra', 'BraA01t03973Z' => 'bra', 'BraA01t03994Z' => 'bra', 'BraA03t13010Z' => 'bra', 'BraA03t13029Z' => 'bra', 'BraA03t13030Z' => 'bra', 'BraA03t14205Z' => 'bra', 'BraA03t15269Z' => 'bra', 'BraA05t22310Z' => 'bra', 'BraA05t22311Z' => 'bra', 'BraA05t22342Z' => 'bra', 'BraA07t31876Z' => 'bra', 'C01p12220' => 'bna', 'C01p50090' => 'bna', 'C01p50100' => 'bna', 'C01p50470' => 'bna', 'C02p44090' => 'bna', 'C03p46740' => 'bna', 'C03p46970' => 'bna', 'C03p46980' => 'bna', 'C03p80410' => 'bna', 'C04p38630' => 'bna', 'C05p52910' => 'bna', 'C05p52920' => 'bna', 'C05p53500' => 'bna', 'C05p53510' => 'bna', 'C06p52320' => 'bna', 'C07p49650' => 'bna', 'CAN.G1003.12' => 'can', 'CAN.G1145.2' => 'can', 'CAN.G321.19' => 'can', 'CAN.G862.36' => 'can', 'CAN.G862.37' => 'can', 'CAN.G862.39' => 'can', 'CAN.G862.41' => 'can', 'CAN.G904.18' => 'can', 'CANSAT35G0115' => 'cansat', 'CANSAT56G2196' => 'cansat', 'CANSAT56G4292' => 'cansat', 'CARHR071890' => 'chi', 'CARHR088990' => 'chi', 'CARHR089010' => 'chi', 'CARHR089350' => 'chi', 'CARHR089360' => 'chi', 'CARHR225130' => 'chi', 'Carub.0002s2528' => 'cru', 'Carub.0003s1374' => 'cru', 'Carub.0003s1413' => 'cru', 'Carub.0003s1414' => 'cru', 'Carub.0007s2293' => 'cru', 'Ca_03459_v3' => 'car', 'Ca_14077_v3' => 'car', 'Ca_18173_v3' => 'car', 'Ca_18174_v3' => 'car', 'CBR_g19595' => 'cbr', 'Cc04_g01020' => 'ccan', 'Cc05_g10170' => 'ccan', 'CDE11G1253' => 'cde', 'Cfa000929' => 'cfa', 'Cfa003505' => 'cfa', 'Cfa003506' => 'cfa', 'Cfa003507' => 'cfa', 'Cfa019449' => 'cfa', 'Cfa021409' => 'cfa', 'Cfa022034' => 'cfa', 'Cfa025290' => 'cfa', 'Cfa026198' => 'cfa', 'Ciclev10015533m.g' => 'ccl', 'Ciclev10020692m.g' => 'ccl', 'Ciclev10025729m.g' => 'ccl', 'Ciclev10025921m.g' => 'ccl', 'Ciclev10025922m.g' => 'ccl', 'Ciclev10026187m.g' => 'ccl', 'CiPaw.01G215400' => 'cil', 'CiPaw.01G215500' => 'cil', 'CiPaw.01G215600' => 'cil', 'CiPaw.01G215700' => 'cil', 'CiPaw.09G122100' => 'cil', 'CiPaw.10G090700' => 'cil', 'ClCG01G024730' => 'cla', 'ClCG07G014430' => 'cla', 'ClCG07G014440' => 'cla', 'ClCG07G014450' => 'cla', 'COL.COLO4_00212' => 'col', 'COL.COLO4_17406' => 'col', 'COL.COLO4_29968' => 'col', 'COL.COLO4_30799' => 'col', 'COL.COLO4_30800' => 'col', 'COL.COLO4_30809' => 'col', 'COL.COLO4_31048' => 'col', 'Cpa.g.sc17.9' => 'cpa', 'Cpa.g.sc25.151' => 'cpa', 'Cpa.g.sc77.100' => 'cpa', 'Cre03.g171300' => 'cre', 'CsaV3_3G030850' => 'csa', 'CsaV3_3G030860' => 'csa', 'CsaV3_3G030870' => 'csa', 'CsaV3_6G051820' => 'csa', 'CSS0001523' => 'camsi', 'CSS0002156' => 'camsi', 'CSS0005211' => 'camsi', 'CSS0007164' => 'camsi', 'CSS0009391' => 'camsi', 'CSS0011299' => 'camsi', 'CSS0013477' => 'camsi', 'CSS0016435' => 'camsi', 'CSS0016579' => 'camsi', 'CSS0019905' => 'camsi', 'CSS0021508' => 'camsi', 'CSS0021734' => 'camsi', 'CSS0022477' => 'camsi', 'CSS0023781' => 'camsi', 'CSS0027148' => 'camsi', 'CSS0027935' => 'camsi', 'CSS0028934' => 'camsi', 'CSS0030112' => 'camsi', 'CSS0030377' => 'camsi', 'CSS0033061' => 'camsi', 'CSS0033932' => 'camsi', 'CSS0035238' => 'camsi', 'CSS0037062' => 'camsi', 'CSS0037875' => 'camsi', 'CSS0038817' => 'camsi', 'CSS0048315' => 'camsi', 'DCAR_003902' => 'dca', 'DCAR_019640' => 'dca', 'DCAR_021060' => 'dca', 'DCAR_026426' => 'dca', 'Dinv05215' => 'din', 'Dinv13305' => 'din', 'Dinv37966' => 'din', 'Duzib187G1396' => 'dzi', 'Duzib192G0292' => 'dzi', 'Duzib192G0328' => 'dzi', 'Duzib213G0401' => 'dzi', 'Duzib235G0310' => 'dzi', 'Duzib235G0700' => 'dzi', 'Duzib268G0795' => 'dzi', 'ECA234G2269' => 'eca', 'ECA234G3038' => 'eca', 'ECA234G4816' => 'eca', 'ECA236G2255' => 'eca', 'ECA240G3234' => 'eca', 'ECA240G4335' => 'eca', 'EL10Ac4g08507' => 'bvu', 'EL10Ac7g16446' => 'bvu', 'EL10Ac8g19656' => 'bvu', 'Eucgr.D00288' => 'egr', 'Eucgr.E02418' => 'egr', 'Eucgr.E02420' => 'egr', 'Eucgr.F01413' => 'egr', 'Eucgr.F02471' => 'egr', 'Eucgr.F02472' => 'egr', 'FAN02G2173' => 'fan', 'FAN05G1803' => 'fan', 'FAN11G1353' => 'fan', 'FAN11G2584' => 'fan', 'FAN14G1329' => 'fan', 'FAN16G1100' => 'fan', 'FAN16G1349' => 'fan', 'FAN16G3067' => 'fan', 'FAN21G0200' => 'fan', 'FAN21G2126' => 'fan', 'FAN24G0515' => 'fan', 'FAN25G0574' => 'fan', 'FAN25G1947' => 'fan', 'FvH4_3g05330' => 'fve', 'FvH4_3g16520' => 'fve', 'FvH4_6g35190' => 'fve', 'FvH4_6g35192' => 'fve', 'Glyma.05G141300' => 'gma', 'Glyma.05G141400' => 'gma', 'Glyma.08G096600' => 'gma', 'Glyma.08G096700' => 'gma', 'Glyma.08G096800' => 'gma', 'Glyma.08G097150' => 'gma', 'Glyma.08G097300' => 'gma', 'Glyma.08G175800' => 'gma', 'Glyma.15G250800' => 'gma', 'Glyma.16G090550' => 'gma', 'Gohir.A01G040900' => 'ghi', 'Gohir.A01G041100' => 'ghi', 'Gohir.A01G050180' => 'ghi', 'Gohir.A05G147600' => 'ghi', 'Gohir.A06G103800' => 'ghi', 'Gohir.A06G143100' => 'ghi', 'Gohir.A09G077200' => 'ghi', 'Gohir.A10G056200' => 'ghi', 'Gohir.A10G056400' => 'ghi', 'Gohir.A11G193900' => 'ghi', 'Gohir.D01G028400' => 'ghi', 'Gohir.D01G028500' => 'ghi', 'Gohir.D02G134950' => 'ghi', 'Gohir.D03G068500' => 'ghi', 'Gohir.D03G111500' => 'ghi', 'Gohir.D05G150100' => 'ghi', 'Gohir.D06G149333' => 'ghi', 'Gohir.D06G149366' => 'ghi', 'Gohir.D06G149400' => 'ghi', 'Gohir.D08G189101' => 'ghi', 'Gohir.D09G077200' => 'ghi', 'Gohir.D09G175150' => 'ghi', 'Gohir.D10G058100' => 'ghi', 'Gohir.D10G058300' => 'ghi', 'Gohir.D11G183301' => 'ghi', 'Gohir.D13G062701' => 'ghi', 'Gorai.002G037900' => 'gra', 'Gorai.002G038000' => 'gra', 'Gorai.003G061400' => 'gra', 'Gorai.006G092300' => 'gra', 'Gorai.009G154200' => 'gra', 'Gorai.010G173900' => 'gra', 'Gorai.010G174000' => 'gra', 'Gorai.010G174100' => 'gra', 'Gorai.011G062200' => 'gra', 'Gorai.011G062400' => 'gra', 'GSVIVG01016712001' => 'vvi', 'GSVIVG01016714001' => 'vvi', 'GSVIVG01021520001' => 'vvi', 'GSVIVG01038078001' => 'vvi', 'HanXRQChr03g0073591' => 'han', 'HanXRQChr06g0168411' => 'han', 'HanXRQChr09g0257521' => 'han', 'HanXRQChr10g0283291' => 'han', 'HanXRQChr10g0311871' => 'han', 'HanXRQChr10g0311881' => 'han', 'HanXRQChr11g0329951' => 'han', 'HanXRQChr12g0360171' => 'han', 'HanXRQChr12g0374381' => 'han', 'HanXRQChr13g0389801' => 'han', 'HanXRQChr16g0510611' => 'han', 'HanXRQChr16g0525731' => 'han', 'Haze_05619' => 'cav', 'Haze_08499' => 'cav', 'Haze_16068' => 'cav', 'Haze_16069' => 'cav', 'Haze_16070' => 'cav', 'Haze_16072' => 'cav', 'Haze_26368' => 'cav', 'Haze_26988' => 'cav', 'Hma1.2p1_0020F.1_g014140' => 'hma', 'Hma1.2p1_0090F.1_g046050' => 'hma', 'Hma1.2p1_0090F.1_g046060' => 'hma', 'Hma1.2p1_0090F.1_g046070' => 'hma', 'Hma1.2p1_0505F.1_g168120' => 'hma', 'Hma1.2p1_2826F.1_g329090' => 'hma', 'HPP92_011069' => 'vpl', 'HPP92_017704' => 'vpl', 'HPP92_017729' => 'vpl', 'HPP92_018624' => 'vpl', 'HPP92_018625' => 'vpl', 'Hund02308' => 'sun', 'Hund18670' => 'sun', 'Hund29441' => 'sun', 'Hund29442' => 'sun', 'Lalb_Chr01g0016021' => 'lal', 'Lalb_Chr12g0206911' => 'lal', 'Lalb_Chr25g0285331' => 'lal', 'Lj1C808T6' => 'lonja', 'Lj2A319T37' => 'lonja', 'Lj3g0019836' => 'lja', 'Lj4g0019266' => 'lja', 'Lj8C141T3' => 'lonja', 'Lj9C535T14' => 'lonja', 'Lsat_1_v5_gn_4_29481' => 'lsa', 'Lsat_1_v5_gn_5_120941' => 'lsa', 'Lsat_1_v5_gn_5_136840' => 'lsa', 'Lsat_1_v5_gn_5_136860' => 'lsa', 'Lsat_1_v5_gn_9_103440' => 'lsa', 'Manes.11G016100' => 'mes', 'Manes.11G016200' => 'mes', 'Manes.15G123100' => 'mes', 'Manes.17G071700' => 'mes', 'Mapoly0029s0125' => 'mpo', 'Mapoly0038s0007' => 'mpo', 'MBI18_g24475_MAGBIO' => 'mbi', 'MBI19_g29887_MAGBIO' => 'mbi', 'MCO03G492' => 'mco', 'MCO09G388' => 'mco', 'MD05G1209300' => 'mdo', 'MD05G1281900' => 'mdo', 'MD09G1177800' => 'mdo', 'MD09G1177900' => 'mdo', 'MD10G1195700' => 'mdo', 'MD10G1260600' => 'mdo', 'MD17G1148900' => 'mdo', 'Medtr1g072440' => 'mtr', 'Medtr2g070420' => 'mtr', 'Medtr3g076640' => 'mtr', 'MELO3C007124.2' => 'cme', 'MELO3C022681.2' => 'cme', 'MELO3C022683.2' => 'cme', 'MELO3C022684.2' => 'cme', 'Migut.I01107' => 'egut', 'Migut.M00661' => 'egut', 'Migut.M00662' => 'egut', 'Migut.M00899' => 'egut', 'MSTRG.10931' => 'ama', 'MSTRG.15004' => 'ama', 'MSTRG.7497' => 'ama', 'Nitab4.5_0000484g0020' => 'nta', 'Nitab4.5_0000923g0070' => 'nta', 'Nitab4.5_0001531g0030' => 'nta', 'Nitab4.5_0001864g0010' => 'nta', 'Nitab4.5_0001924g0080' => 'nta', 'Nitab4.5_0002209g0150' => 'nta', 'Nitab4.5_0006232g0090' => 'nta', 'Nitab4.5_0006232g0100' => 'nta', 'Nitab4.5_0009337g0010' => 'nta', 'Nitab4.5_0010758g0010' => 'nta', 'Nitab4.5_0010758g0040' => 'nta', 'Nn3g20461' => 'nnu', 'Nn3g20465' => 'nnu', 'Nn4g26592' => 'nnu', 'Nn7g37965' => 'nnu', 'Oeu000389.1' => 'oeu', 'Oeu009889.1' => 'oeu', 'Oeu012717.2' => 'oeu', 'Oeu031279.1' => 'oeu', 'Oeu031280.1' => 'oeu', 'Oeu058435.2' => 'oeu', 'Os03g0786100' => 'osa', 'Os04g0623500' => 'osa', 'Os04g0623600' => 'osa', 'Os07g0152900' => 'osa', 'Os07g0616500' => 'osa', 'Os08g0198700' => 'osa', 'Peaxi162Scf00035g01717' => 'pax', 'Peaxi162Scf00038g01956' => 'pax', 'Peaxi162Scf00111g00715' => 'pax', 'Peaxi162Scf00317g00118' => 'pax', 'PGR031G3373' => 'pgr', 'PGR049G0003' => 'pgr', 'PGR049G0004' => 'pgr', 'PGR049G0007' => 'pgr', 'PGR049G0009' => 'pgr', 'PGR119G0176' => 'pgr', 'PGR119G0457' => 'pgr', 'PGR119G0676' => 'pgr', 'PGR119G1013' => 'pgr', 'PGR119G1366' => 'pgr', 'PGR119G2180' => 'pgr', 'PGSC0003DMG400007514' => 'stu', 'PGSC0003DMG400021248' => 'stu', 'PGSC0003DMG400022890' => 'stu', 'PGSC0003DMG400027654' => 'stu', 'PGSC0003DMG401022901' => 'stu', 'PGSC0003DMG402022901' => 'stu', 'PGSC0003DMG403022901' => 'stu', 'Phvul.002G180300' => 'pvu', 'Phvul.005G051800' => 'pvu', 'Phvul.005G052101' => 'pvu', 'Potri.001G394400' => 'ptr', 'Potri.003G069300' => 'ptr', 'Potri.003G069400' => 'ptr', 'Potri.003G069600' => 'ptr', 'Potri.004G065200' => 'ptr', 'Potri.011G112700' => 'ptr', 'Pp3c10_6670' => 'ppa', 'Pp3c13_6260' => 'ppa', 'Pp3c15_12460' => 'ppa', 'Pp3c18_20200' => 'ppa', 'Pp3c19_3840' => 'ppa', 'Pp3c22_7690' => 'ppa', 'Pp3c4_29460' => 'ppa', 'PRCOL_00005379' => 'pco', 'PRCOL_00006770' => 'pco', 'Prupe.3G037100' => 'ppe', 'Prupe.3G037200' => 'ppe', 'Prupe.4G082600' => 'ppe', 'Prupe.4G148200' => 'ppe', 'Psat0s1265g0040' => 'psa', 'Psat1g001560' => 'psa', 'Psat3g049840' => 'psa', 'Psat5g036600' => 'psa', 'Psat5g179800' => 'psa', 'Psat7g080840' => 'psa', 'Psat7g080880' => 'psa', 'Psat7g080920' => 'psa', 'Psat7g081040' => 'psa', 'PSO017G5967' => 'pso', 'PSO170G0450' => 'pso', 'PSO172G0001' => 'pso', 'PSO386G0250' => 'pso', 'PSO541G5584' => 'pso', 'PSO541G5625' => 'pso', 'PSO541G6341' => 'pso', 'PSO675G1795' => 'pso', 'PSO675G8792' => 'pso', 'PSO724G1111' => 'pso', 'PSO781G0161' => 'pso', 'QL01p017953' => 'qlo', 'QL04p071312' => 'qlo', 'QL05p003322' => 'qlo', 'QL05p003334' => 'qlo', 'QL05p003388' => 'qlo', 'QL05p003433' => 'qlo', 'QL05p003436' => 'qlo', 'QL05p003548' => 'qlo', 'QL05p003554' => 'qlo', 'QL05p003625' => 'qlo', 'QL05p057331' => 'qlo', 'QL09p027361' => 'qlo', 'RcHm_v2.0_Chr2g0146451' => 'rch', 'RcHm_v2.0_Chr2g0146471' => 'rch', 'RcHm_v2.0_Chr2g0146491' => 'rch', 'RcHm_v2.0_Chr2g0146501' => 'rch', 'RcHm_v2.0_Chr2g0146521' => 'rch', 'RcHm_v2.0_Chr2g0146541' => 'rch', 'RcHm_v2.0_Chr3g0472911' => 'rch', 'RcHm_v2.0_Chr5g0014411' => 'rch', 'RcHm_v2.0_Chr5g0027571' => 'rch', 'RcHm_v2.0_Chr6g0278091' => 'rch', 'RcHm_v2.0_Chr6g0278121' => 'rch', 'RcHm_v2.0_Chr6g0278131' => 'rch', 'Rhsim04G0033100' => 'rsi', 'Rhsim04G0033600' => 'rsi', 'Rhsim13G0114800' => 'rsi', 'Rhsim13G0114900' => 'rsi', 'RhsimUnG0174200' => 'rsi', 'Sabra03G0040800' => 'sbr', 'Sabra03G0040900' => 'sbr', 'Sabra04G0043500' => 'sbr', 'Sabra16G0258700' => 'sbr', 'SalBow8G1338' => 'sbo', 'Sc05g0006090' => 'sci', 'Sc07g0003000' => 'sci', 'Sc15g0000600' => 'sci', 'Sc15g0000610' => 'sci', 'Sc15g0000620' => 'sci', 'Sed0007129' => 'sed', 'Sed0014234' => 'sed', 'Sed0019530' => 'sed', 'Sed0024647' => 'sed', 'Sed0027571' => 'sed', 'SEGI_00138' => 'sgi', 'SEGI_06806' => 'sgi', 'SEGI_08745' => 'sgi', 'SEGI_10186' => 'sgi', 'SEGI_13758' => 'sgi', 'SEGI_16020' => 'sgi', 'SEGI_21476' => 'sgi', 'SEGI_36032' => 'sgi', 'SEGI_38296' => 'sgi', 'SGA_v2.0_scaffold181G39777' => 'sas', 'SGA_v2.0_scaffold1G00187' => 'sas', 'SGA_v2.0_scaffold71G23885' => 'sas', 'SGA_v2.0_scaffold73G24360' => 'sas', 'SHI11120' => 'shi', 'SHI11121' => 'shi', 'SHI11122' => 'shi', 'SHI24841' => 'shi', 'SMO367G0060' => 'smo', 'SMO367G0311' => 'smo', 'Solyc03g122130.3' => 'sly', 'Solyc03g122140.3' => 'sly', 'Solyc03g122150.3' => 'sly', 'Solyc03g122160.1' => 'sly', 'Solyc03g122170.4' => 'sly', 'Solyc07g056540.3' => 'sly', 'Solyc08g048250.4' => 'sly', 'Solyc10g007600.3' => 'sly', 'Sopen03g040920' => 'spe', 'Sopen03g040930' => 'spe', 'Sopen03g040940' => 'spe', 'Sopen07g029900' => 'spe', 'Sopen10g003520' => 'spe', 'Sp3g12390' => 'spa', 'Sp3g12710' => 'spa', 'Sp3g12720' => 'spa', 'Sp5g33480' => 'spa', 'Sp7g15710' => 'spa', 'TAR489G0002' => 'tar', 'TAR624G0552' => 'tar', 'TAR627G0358' => 'tar', 'TAR627G0933' => 'tar', 'TAR633G1768' => 'tar', 'THA.LOC104810375' => 'tha', 'THA.LOC104812859' => 'tha', 'THA.LOC104813976' => 'tha', 'THA.LOC104815588' => 'tha', 'THA.LOC104822663' => 'tha', 'Thecc.06G125100' => 'tca', 'Thecc.06G125200' => 'tca', 'Thecc.06G125400' => 'tca', 'Thecc.06G148500' => 'tca', 'Thecc.07G147500' => 'tca', 'Thhalv10018744m.g' => 'esa', 'Thhalv10020979m.g' => 'esa', 'Thhalv10020982m.g' => 'esa', 'Thhalv10020996m.g' => 'esa', 'Thhalv10025514m.g' => 'esa', 'TPR.G29765' => 'tpr', 'TPR.G9558' => 'tpr', 'TPR.G9583' => 'tpr', 'TPR.G9584' => 'tpr', 'TWI09G1602' => 'twi', 'TWI39G0514' => 'twi', 'TWI59G0812' => 'twi', 'TWI59G1190' => 'twi', 'TWI73G0021' => 'twi', 'unitig_0.g2282' => 'ugi', 'unitig_52.g17393' => 'ugi', 'unitig_749.g13799' => 'ugi', 'vmacro03334' => 'vma', 'vmacro05716' => 'vma', 'vmacro09437' => 'vma', 'vmacro09442' => 'vma', 'vmacro09444' => 'vma', 'vmacro15056' => 'vma', 'vmacro15057' => 'vma', 'vmacro15058' => 'vma', 'vmacro18961' => 'vma', 'vmacro20267' => 'vma', 'vmacro20268' => 'vma', 'VMungo0251G0864' => 'vmu', 'VMungo1080G1136' => 'vmu', 'Zm00001eb070270' => 'zma', 'Zm00001eb070280' => 'zma', 'Zm00001eb109300' => 'zma', 'Zm00001eb300130' => 'zma', 'Zm00001eb409600' => 'zma', 'Zm00001eb413830' => 'zma' ) $gf_id = 'HOM05D000945' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000945' ) $data_identifier = 'HOM05D000945' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 2, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 1, 'cfa' => (int) 9, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 26, 'dca' => (int) 4, 'din' => (int) 3, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 26, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 3, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 2, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 4, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 9, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 5, 'ugi' => (int) 3, 'vma' => (int) 11, 'vmu' => (int) 2, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413830' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1